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As you can see here the LOCAL PROCESS is before the routing decission, MANGLE OUTPUT, MANGLE POSTROUTING and NAT POSTROUTING, so the content of the packet can change easily before the packet starts its journey on the wires.
In order to achieve what you want, you can do it the same way you do it in your other linux box. Set mark of 0x66 (this is an example, see what are the marks available in “ip rule ls”) to the application you want to send over a specific interface and the netbalancer will do the rest.